Sefika Efeoglu

Research Scientist working on Semantic Web, Knowledge Graphs, Neuro-Symbolic AI, Large Language Models, Continual Learning, Retrieval-Augmented Generation, and Trustworthy AI.

Sefika Efeoglu
👤 About

Profile

I am a Research Scientist at Senckenberg – Leibniz Institution for Biodiversity and Earth System Research and a PhD researcher in Computer Science at Free University of Berlin. My work focuses on scalable and explainable methods for knowledge graph construction, completion, reasoning, and information extraction by combining symbolic reasoning with foundation models. I am particularly interested in applying these methods to scientific knowledge management and biodiversity knowledge integration.

🧪 Projects

Research Projects

Selected research and infrastructure projects from recent academic and applied work.

Knowledge Graphs

Continual Relation Extraction for Knowledge Graph Completeness

PhD research on continual relation extraction using transformers, encoder-decoder models, and large language models to improve knowledge graph completeness with explainable and continually learning methods.

Biodiversity AI

Biodiversity Knowledge Integration

Developing knowledge graph and LLM-based approaches for semantic integration, entity resolution, and biodiversity knowledge modeling within large-scale scientific data infrastructures.

Explainable AI

SHACL-Based Neuro-Symbolic Explainability

Developing neuro-symbolic methods for continual relation extraction and hallucination resolution with SHACL-based explainability for trustworthy knowledge graph construction.

Large Language Models

Large Language Models for Continual Relation Extraction

Investigating LLM-based approaches for continual relation extraction to improve adaptive knowledge graph completion across evolving scientific domains.

Retrieval-Augmented Generation

Retrieval-Augmented Relation Extraction

Building retrieval-augmented generation workflows for relation extraction that combine external evidence with more reliable structured prediction.

Ontology Matching

GraphMatcher

Advancing ontology matching with graph representation learning methods for alignment discovery across heterogeneous knowledge organization systems.

📄 Resume

Resume / CV

Selected education, experience, skills, and academic service from the current CV.

Education

  • PhD in Computer Science, Free University of Berlin, Germany (12/2021–Present)
    Thesis: Continual Relation Extraction for Knowledge Graph Completeness
  • Master of Science in Data Science, University of Potsdam, Germany (10/2018–09/2021)
    Thesis: A Deep Learning Approach for Domain-Specific Automated Ontology Construction
  • Bachelor of Computer Engineering, Ege University, Turkey (09/2010–07/2015)
    Thesis: Testing Ontology-Based Semantic Relatedness Measurement in Graph Database in Flickr Dataset
  • Demre Anatolian High School, Turkey (09/2005–06/2009)
    Math and Science Track

Experience

  • Research Scientist, Senckenberg – Leibniz Institution for Biodiversity and Earth System Research (02/2026–Present)
  • Research Associate, Technische Universität Berlin (02/2023–03/2025)
  • Software Engineer, MetGlobal (10/2016–03/2017)
  • Software Engineer, Garanti BBVA Technology (02/2016–08/2016)
  • Student Intern, Multimedia Databases Laboratory, METU (07/2014–08/2014)

Skills

  • Knowledge Graphs, Semantic Web, RDF, OWL, SPARQL, Ontologies
  • Large Language Models, Retrieval-Augmented Generation, Neuro-Symbolic AI
  • Continual Learning, Relation Extraction, NLP, Information Extraction
  • Python, Java, Kotlin, PyTorch, Hugging Face, spaCy, Scikit-learn
  • Elastic, Virtuoso, Docker, federated data systems

Awards / Service

  • Best Scientific Research Report Award, ISWS 2023
  • Graduate Education Scholarship for Study Abroad, Republic of Turkey Ministry of National Education
  • ISWC 2026 Resource Track Reviewer
  • Editorial Activities, Journal of Web Semantics
📚 Publications

Selected Publications

Selected recent publications and submissions from the CV.

  • 2026

    Large Language Models for Continual Relation Extraction

    IEEE Access journal

  • 2025

    Retrieval-Augmented Generation-based Relation Extraction

    Semantic Web Journal

  • 2025

    Fine-Tuning Large Language Models for Relation Extraction within a Retrieval-Augmented Generation Framework

    ACL 2025 XLLM Workshop Paper.

  • 2024

    Exploring Prompt Generation Utilizing Graph Search Algorithms for Ontology Matching

    Semantics 2024

  • 2022

    GraphMatcher: A Graph Representation Learning Approach for Ontology Matching

    International Workshop on Ontology Matching, ISWC 2022.

✨ News

News

Recent milestones from research, infrastructure, and academic service.

  • 2026

    Received Three Abstract Acceptances at TDWG 2026

    I will speak in SYM46 on AI-Readiness Metrics and Metadata for Biodiversity Data.

  • 2026

    Joined Senckenberg as Research Scientist

    Working on knowledge graph and LLM-based approaches for semantic integration, entity resolution, and biodiversity knowledge modeling.

  • 2026

    Secured EuroHPC GPU Grant

    Received high-performance computing support to scale deep learning models and large-scale text-extraction workflows.

  • 2026

    ISWC 2026 Resource Track Reviewer

    Serving the community through peer review and editorial activities in Semantic Web research.

  • 2023

    Best Scientific Research Report Award at ISWS

    The core iteration of this work was also accepted and presented at the Wikidata Workshop at ISWC 2023.

✉️ Contact

For research collaborations, publications, and project updates, please get in touch by email or follow my work online.